SELECTION OF SPECIFIC PRIMERS FOR PCR IN BOVINE LEUKEMIA VIRUS
https://doi.org/10.58318/2957-5702-2022-12-24-35
Abstract
the polymerase chain reaction (PCR) method is widely used to solve various problems. PCR is widely used for the detection of bacterial and viral pathogens. Primers are a very important component of PCR, since the specificity of amplification depends primarily on them. They are necessary for the enzyme to work and are specific to the fragment of interest. Based on the results of the selection of nucleotide sequences of the genome or individual fragments of the virus RNA from the international database on the NCBI website, a large number of sequences for the bovine leukemia virus were identified, which are stored in gene banks and updated daily with new data. The construction of primers in compliance with the necessary parameters is carried out using various computer programs, the main of which are MUSCLE, UGENE V.36.0, Primer-BLAST, Oligo Analyzer and others. The designed primers were then synthesized on the Expedite 8909 oligonucleotide synthesizer, according to the instructions attached to the device. As a result of our experiments, we selected and synthesized specific synthetic oligonucleotides env (g51)_1 and env (g51)_2, for setting up PCR for bovine leukemia.
About the Authors
U. Zh. KuzhebayevaKazakhstan
I. S. Beishova
Kazakhstan
V. А. Ulyanov
Kazakhstan
Т. V. Ulyanova
Kazakhstan
А. М. Kovalchuk
Kazakhstan
N. S. Ginayatov
Kazakhstan
А. Zh. Sidarova
Kazakhstan
References
1. ICTV International Committee on Taxonomy of Viruses (ICTV). Available online at: https://talk.ictvonline.org/taxonomy
2. Buehring G.C., DeLaney A., Shen H. et. al. Bovine leukemia virus discovered in human blood // BMCInfect Dis. – 2019. – Vol. 19, Issue 1. – P. 297-1-297-10. doi: 10.1186/s12879-019-3891-9.
3. Khatami A., Pormohammad A., Farzi R. et. al. Bovine Leukemia virus (BLV) and risk of breast cancer:a systematic review and meta-analysis of case-control studies // Infect Agent Cancer. – 2020. – Vol.15. – P. 48-1-48-8. doi: 10.1186/s13027-020-00314-7.
4. Gillet М., Florins A., Boxus M. et. al. Mechanisms of leukemogenesis induced by bovine leukemia virus: prospects for novel anti-retroviral therapies in human // Retrovirology. – 2007. – Vol. 4. – P. 18-1-18-32. https://doi.org/10.1186/1742-4690-4-18
5. Polat M., Takeshima S.N., Aida Y. Epidemiology and genetic diversity of bovine leukemia virus // Virol J. – 2017. - Vol.14, Issue 1. – P. 209-1-209-16. doi: 10.1186/s12985-017-0876-4.
6. Sultanov A., Rola-Łuszczak M., Mamanova S. et al. Molecular Characterization of Bovine Leukemia Virus with the Evidence of a New Genotype Circulating in Cattle from Kazakhstan / Pathogens. – 2022. – Vol. 11, Issue 2. – P. 180-1-180-21. doi:10.3390/pathogens11020180
7. Bartlett P.C., Ruggiero V.J, Hutchinson H.C. et.al. Current Developments in the Epidemiology and Control of Enzootic Bovine Leukosis as Caused by Bovine Leukemia Virus // Pathogens. – 2020. – Vol. 9, Issue 12. – P. 1058-1-1058-13. doi: 10.3390/pathogens9121058.
8. Petropavlovsky M.V. Immuno-biological evaluation of individual genetic variants of bovine leukemia virus in the conditions of the Ural region / Collection: Digital agriculture - development strategy Proceedings of the International Scientific and Practical Conference (ISPC 2019). Ser. «Advances in Intelligent Systems Research» . – 2019. – P. 372-377.
9. Hamada R., Metwally S., Polat M. et. al. Detection and Molecular Characterization of Bovine Leukemia Virus in Egyptian Dairy Cattle // Front Vet Sci. – 2020. – Vol. 7. – P. 608-1-608-13. doi: 10.3389/fvets.2020.00608
10. Петропавловский М.В., Безбородова Н.А., Романова А.С. и др. Опыт применения полимеразной цепной реакции при диагностике вируса лейкоза крупного рогатого скота и ее эффективность на разных этапах проведения оздоровительных мероприятий / Аграрный вестник Урала. – 2019. – №12(191). – С. 52-59.
11. Вангели С.В. Сравнительная ультраструктурная характеристика культур клеток, хронически инфицированных вирусом лейкоза крупного рогатого скота: дис... канд.вет.наук: 06.02.02 / Вангели Сергей Валерьевич. – Москва, 2015. – 114 с.
12. Kerkhofs P., Gatot S., Knapen K. Longterm protection against bovine leukaemia virus replication in cattle and sheep / J. Gen.Virol. – 2000. – Vol. 81. – P. 957-963.
13. Rossler Н., Burkhardt Н., Rosental S. Influence of different culture conditions on BLV expression in permanently infected PLK cell lines / Folia biol. (CSSR). – 1985. – Vol.31, Issue 4. – P. 273-283.
14. Schwartz I., Bensaid A., Polack B. In vivo leukocyte tropism of bovine leukemia virus in sheep and cattle / J. Virol. – 1994. – Vol. 68, Issue 7. – P.4589-4596.
15. Bruck C., Rensonnet N., Portetelle D. et.al. Biologically active epitopes of bovine leukemia virus glycoprotein gp51: their dependence on protein glycosylation and genetic variability // Virology. – 1984. – Vol. 136, Issue 1. – P. 20-31. doi: 10.1016/0042-6822(84)90244-7.
16. Sagata N., Yasunaga T., Tsuzuku-Kawamura J. et. al. Complete nucleotide sequence of the genome of bovine leukemia virus: its evolutionary relationship to other retroviruses // Proc Natl Acad Sci U S A. – 1985. – Vol. 82, Issue 3. – P. 677-681. doi: 10.1073/pnas.82.3.677.
17. Dieffenbach C., Dveksler G. PCR Primer: A Laboratory Manual / Cold Spring Harbor Laboratory Pr., – Р. 2003-520.
18. Barlett J., Stirling D. PCR Protocols // Methods in molecular biology. – 2003. – Vol.226. – 556 p.
19. Охапкина С.С., Акишев А.Г., Дегтярев С.Х. Полимеразно-цепная реакция (ПЦР) и ее применение / Библиотека научных трудов СибЭнзим. –2014. http://sciencerussian.sibenzyme.com/ papers/popularabout/using-pcr
20. Derse D., Diniak A.J., Casey J.W. et.al. Nucleotide sequence and structure of integrated bovine leukemia virus long terminal repeats / Virology. – 1985. –Vol. 141. – P. 162-166.
21. Derse D., Casey J.W. Two elements in the bovine leukemia virus long terminal repeat that regulate gene expression / Science. – 1986. –Vol. 231. – P. 1437-1440.
22. Гильманов Х.Х. Генотипирование крупного рогатого скота по генам, определяющим устойчивость к лейкозу, и геноидентификация его этиологического агента: дис... канд.биол.наук. / Гильманов Хамид Халимович. – Казань, 2019. – 163 с.
23. Martin D., Arjona A., Soto I. et.al. Comparative study of PCR as a direct assay and ELISA and AGID as indirect assays for the detection of bovine leukaemia virus / Vet. Med . B. Infect. Dis. Vet. Publ Health. – 2001. – Vol. 48. – P. 97-106.
24. Облап P.В., Глазко В.И., Созинов А.А. Вирус бычьего лейкоза и диагностика инфицированных животных / Цитология и генетика. – 1997. – №31. – С. 41-43.
Review
For citations:
Kuzhebayeva U.Zh., Beishova I.S., Ulyanov V.А., Ulyanova Т.V., Kovalchuk А.М., Ginayatov N.S., Sidarova А.Zh. SELECTION OF SPECIFIC PRIMERS FOR PCR IN BOVINE LEUKEMIA VIRUS. Biosafety and Biotechnology. 2022;1(12):24-35. (In Russ.) https://doi.org/10.58318/2957-5702-2022-12-24-35